Photo: Kamigata0, CC BY-SA 4.0 via Wikimedia Commons
Like most zoos, visitors will see lions, tigers, and monkeys. There is an aviary and reptile exhibit, as well. The zoo has some native Japanese animals, but there isn't much to set it apart from most other zoos in the world.
Kyoto City Zoo (京都市動物園) is a zoo located in Sakyō ward, Kyoto and was established in 1903, making it the second oldest zoo in the country after Ueno Zoo in Tokyo.
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京都市美術館
This museum houses a wide variety of art with the permanent collections featuring artists that are from Kyoto. Special exhibits may feature Japanese art from other areas or foreign artwork.
京都国立近代美術館
An interesting museum featuring works from famous, as well as up-and-coming modern artists. Exhibits change frequently, so it's best to call or visit the website to see exactly what will featured during your visit. You may also want to make sure they will not be changing exhibitions, as they often close an entire floor of the museum during the transition.
平安神宮, Heian-jingū
Built in 1895 in commemoration of the 1100th anniversary of Kyoto, the shrine was designed as a scaled-down replica of the original Imperial Palace. The Shin'en Garden encircling the backside of the shrine is one of the city's most beautiful gardens and a popular place for hanami, particularly for those who prefer pink blossoms.
細見美術館 Hosomi Bijutsukan
A museum that showcases Japanese religious art from all periods of history. Exhibits change each season but typically feature famous artwork from local temples and shrines.
青蓮院
Once associated with the head Tendai Buddhist sect temple, Enryaku-ji on Mount Hiei, Shōren-in is considered to be one of the top five Tendai sect temples. During the Tokugawa period, it served as temporary lodging for a retired emperor after the Imperial Palace burned down. Those who come during November may be able to practice a tea ceremony (See "Do" section of the guide).
南禅寺
with its distinctive two-story entrance gate (sanmon) and aqueduct, is another popular temple in Kyoto, but its larger size means that it doesn't seem as crowded as many of the others. Nearest bus stop: Nanzenji, Eikando-michi. Nearest subway station: Keage. Open daily, 08:30-17:00. Walking around the temple complex is free, including the unusual Meiji-era aqueduct that wouldn't look out of place in Italy. There are three regions of Nanzenji that you can pay to enter: Sanmon - the two-story main gate to Nanzenji Temple charges ¥500 for admission, and offers pleasant views over the surrounding area of the city. Nanzen-in Zen Temple - a small, but relaxing temple and moss garden behind the aqueduct, dating back to the 13th century, charges ¥300 for admission, and is probably only worth it if you have a particular interest in Zen Buddhism. Hōjō - the abbot's quarters, is a more interesting building, with a small raked gravel garden and some impressive paintings on the sliding doors of the buildings.